Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CLEC3AC-type lectin domain family 3 member A. (200 aa)    
Predicted Functional Partners:
trip4
Thyroid hormone receptor interactor 4.
    
   0.714
znrf1
Zinc and ring finger 1.
      
 0.705
rnaseh1
Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
    
   0.659
vat1l
Vesicle amine transport 1-like.
 
  
 
 0.642
cish
Cytokine-inducible SH2-containing protein.
      
 0.606
syf2
SYF2 pre-mRNA-splicing factor.
      
 0.582
H2LXQ7_ORYLA
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
     
 0.579
LOC101170511
Nuclear factor of activated T cells 5a.
      
 0.567
psmd7
Proteasome 26S subunit, non-ATPase 7.
      
 0.567
wwox
WW domain containing oxidoreductase.
    
 
 0.538
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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