STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159579Peptidyl arginine deiminase, type II. (693 aa)    
Predicted Functional Partners:
fat2
FAT atypical cadherin 2.
      
 0.505
SPTBN1
Spectrin beta chain; Belongs to the spectrin family.
      
 0.502
LOC101162567
Ninjurin 2.
      
 0.502
LOC101164035
Spectrin beta chain; Belongs to the spectrin family.
      
 0.502
lgi3
Leucine-rich repeat LGI family, member 3.
      
 0.501
LOC101171158
Tetraspanin.
      
 0.459
LOC101165395
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
      
 0.459
LOC101157800
Proteolipid protein 1b.
      
 0.459
LOC101155717
Septin 7b; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.
      
 0.459
LOC101171500
Proteolipid protein 1a.
      
 0.459
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.