STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170589BTB (POZ) domain containing 17b. (483 aa)    
Predicted Functional Partners:
bbs9
Bardet-Biedl syndrome 9.
    
 0.537
bbs7
Bardet-Biedl syndrome 7.
    
 0.494
ttc8
Tetratricopeptide repeat domain 8.
    
 0.484
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.468
ttc13
Tetratricopeptide repeat domain 13.
    
 0.458
ubxn7
UBX domain protein 7.
    
  0.450
lrrcc1
Leucine rich repeat and coiled-coil centrosomal protein 1.
     
 0.408
LOC105354761
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.408
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.