Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170589BTB (POZ) domain containing 17b. (483 aa)    
Predicted Functional Partners:
ttc13
Tetratricopeptide repeat domain 13.
    
 0.579
ubxn7
UBX domain protein 7.
    
  0.521
kif19
Kinesin family member 19; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
     
 0.508
lrrcc1
Leucine rich repeat and coiled-coil centrosomal protein 1.
     
 0.489
bbs9
Bardet-Biedl syndrome 9.
    
 0.487
H2M6P8_ORYLA
CDC42 effector protein (Rho GTPase binding) 5.
    
 
 0.466
ttc8
Tetratricopeptide repeat domain 8.
    
 0.444
bbs7
Bardet-Biedl syndrome 7.
    
 0.432
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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