Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
c2cd2lC2cd2 like. (692 aa)    
Predicted Functional Partners:
tmco4
Transmembrane and coiled-coil domains 4.
      
 0.758
ENSORLP00000031025
Proline-rich transmembrane protein 2.
    
 
 0.715
ilkap
Integrin-linked kinase-associated serine/threonine phosphatase.
      
 0.635
srprb
SRP receptor subunit beta.
      
 0.631
LOC101174517
Macoilin 1a.
      
 0.606
maco1
Macoilin 1b.
      
 0.606
srpra
SRP receptor subunit alpha.
      
 0.558
inpp5b
Inositol polyphosphate-5-phosphatase B.
   
  
 0.544
srp14
Signal recognition particle 14.
      
 0.498
LOC101168279
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
      
 0.498
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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