STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sh3tc2SH3 domain and tetratricopeptide repeats 2. (1553 aa)    
Predicted Functional Partners:
FIG4
FIG4 phosphoinositide 5-phosphatase.
      
 0.673
ap5s1
Adaptor related protein complex 5 subunit sigma 1.
      
 0.560
gdap1
Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily.
      
 0.558
sh3tc1
SH3 domain-containing protein.
      
0.558
LOC101172503
Zinc finger and BTB domain containing 3.
      
 0.558
sbf2
SET binding factor 2.
      
 0.515
sbf1
SET binding factor 1.
      
 0.515
znf367
Zinc finger protein 367.
      
 0.493
mpz
Myelin protein zero.
      
 0.452
mtmr2
Myotubularin related protein 2.
      
 0.443
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.