STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sh3tc2SH3 domain and tetratricopeptide repeats 2. (1553 aa)    
Predicted Functional Partners:
FIG4
FIG4 phosphoinositide 5-phosphatase.
      
 0.895
ap5s1
Adaptor related protein complex 5 subunit sigma 1.
      
 0.754
sh3tc1
SH3 domain-containing protein.
      
 0.718
LOC101172503
Zinc finger and BTB domain containing 3.
      
 0.702
sbf2
SET binding factor 2.
      
 0.696
sbf1
SET binding factor 1.
      
 0.696
gdap1
Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily.
      
 0.695
znf367
Zinc finger protein 367.
      
 0.694
kansl2
KAT8 regulatory NSL complex subunit 2.
      
 0.614
H2M7X1_ORYLA
LITAF domain-containing protein.
   
  
 0.612
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.