Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
svep1Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1. (3464 aa)    
Predicted Functional Partners:
LOC101155444
Uncharacterized protein.
    
 0.825
ripk4
Receptor-interacting serine-threonine kinase 4.
   
 0.815
H2LRH6_ORYLA
Uncharacterized protein.
    
  0.791
tnn
Tenascin N.
    
  0.791
tnr
Tenascin R (restrictin, janusin).
    
  0.791
LOC101171095
Zmp:0000000846.
    
  0.791
LOC101170815
Tenascin C.
    
  0.791
mphosph6
M-phase phosphoprotein 6.
     
 0.760
hspa14
Heat shock protein 14; Belongs to the heat shock protein 70 family.
    
 0.738
bmp4
Bone morphogenetic protein 4.
    
 0.736
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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