STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
otud7aOTU deubiquitinase 7A. (952 aa)    
Predicted Functional Partners:
ubc
Ubiquitin B.
   
  0.778
ubxn7
UBX domain protein 7.
   
 
 0.761
rps27a
Ribosomal protein S27a.
   
  0.758
LOC101171732
Adhesion G protein-coupled receptor A1a.
      
 0.739
glrx5
Glutaredoxin 5 homolog (S. cerevisiae).
      
 0.690
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.679
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
    
  0.679
LOC101172593
Tumor necrosis factor a (TNF superfamily, member 2).
   
 0.643
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.638
llgl2
LLGL scribble cell polarity complex component 2.
      
 0.619
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.