Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
otud7aOTU deubiquitinase 7A. (952 aa)    
Predicted Functional Partners:
glrx5
Glutaredoxin 5 homolog (S. cerevisiae).
      
 0.886
rps27a
Ribosomal protein S27a.
    
  0.841
rora
RAR-related orphan receptor A, paralog a.
      
 0.835
ubc
Ubiquitin B.
    
  0.798
LOC101158815
SERPIN domain-containing protein; Belongs to the serpin family.
      
 0.794
LOC101171732
Adhesion G protein-coupled receptor A1a.
      
 0.784
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.763
acbd4
Acyl-CoA binding domain containing 4.
    
 
 0.730
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.709
llgl2
LLGL scribble cell polarity complex component 2.
    
 
 0.698
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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