Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tax1bp1Tax1 (human T-cell leukemia virus type I) binding protein 1b. (837 aa)    
Predicted Functional Partners:
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
    
 0.999
ubc
Ubiquitin B.
   
  0.990
LOC101155936
NBR1 autophagy cargo receptor b.
   
 0.989
nbr1
NBR1 autophagy cargo receptor a.
   
 0.989
sqstm1
Sequestosome 1.
   
 0.986
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
   
 0.972
LOC101164514
SKICH domain-containing protein.
    
0.967
optn
Optineurin.
   
 0.966
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.963
LOC101162305
Uncharacterized protein.
   
    0.962
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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