STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169291Golgi apparatus membrane protein TVP23 homolog. (198 aa)    
Predicted Functional Partners:
LOC101155322
Protein YIPF.
   
 
 0.591
yipf1
Protein YIPF.
   
 
 0.591
ulk1
Unc-51 like autophagy activating kinase 1.
    
   0.580
LOC101167046
Unc-51 like autophagy activating kinase 1a.
    
   0.580
LOC101160680
Unc-51 like autophagy activating kinase 2.
    
   0.580
yipf3
Protein YIPF.
   
 
 0.541
LOC101172961
Serine/threonine kinase 35; Belongs to the protein kinase superfamily.
    
   0.521
ulk3
Unc-51 like kinase 3; Belongs to the protein kinase superfamily.
    
   0.521
pdik1l
PDLIM1 interacting kinase 1 like; Belongs to the protein kinase superfamily.
    
   0.521
LOC101161023
Si:ch211-63o20.7; Belongs to the protein kinase superfamily.
    
   0.521
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.