Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101169291Golgi apparatus membrane protein TVP23 homolog. (198 aa)    
Predicted Functional Partners:
LOC101155322
Protein YIPF.
   
 
 0.673
yipf1
Protein YIPF.
   
 
 0.673
yipf3
Protein YIPF.
   
 
 0.594
ulk1
Unc-51 like autophagy activating kinase 1.
    
   0.512
LOC101167046
Unc-51 like autophagy activating kinase 1a.
    
   0.512
LOC101160680
Unc-51 like autophagy activating kinase 2.
    
   0.512
aasdh
Aminoadipate-semialdehyde dehydrogenase.
      
 0.498
cnih4
Cornichon family AMPA receptor auxiliary protein 4.
      
 0.478
pigw
Phosphatidylinositol-glycan biosynthesis class W protein; Probable acetyltransferase, which acetylates the inositol ring of phosphatidylinositol during biosynthesis of GPI-anchor.
      
 0.464
drg2
Developmentally regulated GTP binding protein 2.
      
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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