STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
otop2Otopetrin 2. (620 aa)    
Predicted Functional Partners:
LOC101169538
Usher syndrome 1Ga (autosomal recessive).
      
 0.830
Best4
Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family.
   
  
 0.788
tmem128
Transmembrane protein 107.
      
 0.716
HID1
HID1 domain containing.
      
 0.585
LOC101175356
HID1 domain containing b.
      
 0.585
onecut1
One cut domain family member.
   
  
 0.503
LOC101162622
Uncharacterized protein.
   
  
 0.489
id2
Inhibitor of DNA binding 2a.
      
 0.441
LOC101164350
Protocadherin-related 15b.
      
 0.434
H2LW70_ORYLA
Vasorin b.
   
  
 0.428
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.