STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
otop2Otopetrin 2. (620 aa)    
Predicted Functional Partners:
LOC101169538
Usher syndrome 1Ga (autosomal recessive).
      
 0.817
tmem128
Transmembrane protein 107.
 
    
 0.792
DRD5
Dopamine receptor D5; Belongs to the G-protein coupled receptor 1 family.
 
    
 0.521
LOC101164350
Protocadherin-related 15b.
      
 0.520
LOC101167616
Usher syndrome 1C.
      
 0.501
HID1
HID1 domain containing.
      
 0.446
LOC101175356
HID1 domain containing b.
      
 0.446
pcdh15
Protocadherin-related 15a.
      
 0.446
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.