Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
foxn4Forkhead box N4. (516 aa)    
Predicted Functional Partners:
LOC100125524
Forkhead box N1.
   
  
0.936
foxj1
Fork-head domain-containing protein.
   
  
 0.863
LOC101165351
Forkhead box J1b.
   
  
 0.863
ccno
Uncharacterized protein; Belongs to the cyclin family.
    
 0.789
ccdc177
Uncharacterized protein.
    
 
 0.774
ptf1a
Pancreas associated transcription factor 1a.
    
 0.769
ewsr1
EWS RNA-binding protein 1b.
    
 
 0.732
sp1
Sp1 transcription factor.
    
 0.732
LOC101169703
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.679
ube2i
Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.679
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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