STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
foxn4Forkhead box N4. (516 aa)    
Predicted Functional Partners:
ccdc177
Uncharacterized protein.
    
 
 0.691
ptf1a
Pancreas associated transcription factor 1a.
   
 
 0.581
hoxc13
Homeobox C13a.
   
 
 0.544
Myo15b
Myosin XVB.
   
  
 0.519
atoh7
Atonal bHLH transcription factor 7.
   
  
 0.499
barhl2
BarH-like homeobox 2.
   
 0.498
ccno
Uncharacterized protein; Belongs to the cyclin family.
    
 0.469
Twist2
Twist2.
   
 
 0.467
twist1-2
Basic helix-loop-helix transcription factor twist.
   
 
 0.465
LOC101158882
Sp8 transcription factor b.
    
 0.463
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.