STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158301Homeobox A13b. (289 aa)    
Predicted Functional Partners:
umodl1
ZP domain-containing protein.
      
 0.543
nr0b2
Nuclear receptor subfamily 0, group B, member 2a.
    
 
 0.507
LOC101162828
Mesoderm posterior ba.
    
 
 0.507
tfap2a
Transcription factor AP-2 alpha.
    
 
 0.467
tfap2b
Transcription factor AP-2 beta.
    
 
 0.467
meis1
Meis homeobox 1 b.
    
 
 0.461
meis2
Meis homeobox 2a.
    
 
 0.461
LOC101171546
Meis homeobox 2b.
    
 
 0.461
LOC101170140
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.441
LOC101158794-2
Homeobox A10b.
   
  
0.431
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.