STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amnAmnion associated transmembrane protein. (473 aa)    
Predicted Functional Partners:
cubn
Cubilin (intrinsic factor-cobalamin receptor).
   
 0.938
ENSORLP00000040574
CUB domain-containing protein.
   
 0.881
cdcp2
CUB domain containing protein 2.
   
 0.881
LOC101163011
Transcobalamin II.
     
 0.720
pcolce2
Procollagen C-endopeptidase enhancer 2b.
   
 0.701
LOC101165090
Procollagen C-endopeptidase enhancer a.
   
 0.701
LOC101165261
Procollagen C-endopeptidase enhancer b.
   
 0.701
LOC101161259
ATP-binding cassette, sub-family G (WHITE), member 4a.
      
 0.690
mfrp
Membrane frizzled-related protein.
   
 0.587
ENSORLP00000027324
Uncharacterized protein.
   
 0.587
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.