STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161962Nuclear factor of activated T cells 5b. (1343 aa)    
Predicted Functional Partners:
LOC101163203
Inositol-1-monophosphatase.
      
 0.682
LOC101166344
Inositol-1-monophosphatase.
      
 0.547
tert
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
      
 0.511
nob1
NIN1 (RPN12) binding protein 1 homolog.
      
 0.504
LOC101160918
Glutamine-fructose-6-phosphate transaminase 2.
      
 0.503
dlx3
Distal-less homeobox 3b.
      
 0.498
babam2
BRISC and BRCA1 A complex member 2.
      
 0.483
tmem101
Transmembrane protein 101.
      
 0.478
vegfc
PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.
    
 
 0.469
meox1
Mesenchyme homeobox 1.
      
 0.469
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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