Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156754Nipped-B protein. (2658 aa)    
Predicted Functional Partners:
mau2
MAU2 sister chromatid cohesion factor.
    
 0.996
smc3
Structural maintenance of chromosomes protein.
   
 0.988
pds5b
PDS5 cohesin associated factor B.
   
 0.947
pds5a
PDS5 cohesin associated factor A.
   
 0.947
smc1b
Structural maintenance of chromosomes protein.
   
 0.929
smc1a
Structural maintenance of chromosomes protein.
   
 0.929
rad21
Uncharacterized protein.
   
 0.911
LOC101173147
RAD21 cohesin complex component like 1.
   
 0.911
nipbl
Nipped-B protein.
  
  
 
0.901
RBM20
RNA binding motif protein 20.
   
 0.898
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.