STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158794-2Homeobox A10b. (320 aa)    
Predicted Functional Partners:
hoxa9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
   
 
 0.836
HOXA7
Homeobox A7.
   
 
 0.571
ipo8
Importin 8.
    
   0.501
ipo7
Importin 7.
    
   0.501
H2MT59_ORYLA
Homeobox D4a.
   
 
 0.494
hoxc8
Homeobox C10a.
  
 
0.483
LOC101161653
Homeobox A11a.
   
 
0.433
LOC101158301
Homeobox A13b.
   
  
0.431
hoxd9
HoxD10a.
   
 
 0.427
LOC101162380
Homeobox A13a.
   
  
0.426
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.