STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158794-2Homeobox A10b. (320 aa)    
Predicted Functional Partners:
hoxa9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
   
  
0.765
HOXA7
Homeobox A7.
   
 
0.569
LOC100301594
Homeobox A4a.
   
 
0.477
hoxc8
Homeobox C10a.
  
 
0.459
LOC101169786
HoxB5a.
   
 
0.457
LOC101161653
Homeobox A11a.
   
  
0.455
hoxd9
HoxD10a.
   
 
0.435
LOC101158301
Homeobox A13b.
   
  
0.434
hoxb5
Homeobox B5b.
   
 
0.425
LOC101162380
Homeobox A13a.
   
  
0.420
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.