STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hoxa9bHomeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (247 aa)    
Predicted Functional Partners:
nup98
Nucleoporin 98.
      
 0.697
LOC101173202
RUNX family transcription factor 1.
      
 0.570
spi1
Spi-1 proto-oncogene b.
    
 
 0.538
myb
Uncharacterized protein.
      
 0.489
kat6a
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 
 0.485
lcor
Ligand dependent nuclear receptor corepressor.
    
 
 0.467
LOC101161575
Uncharacterized protein.
    
 
 0.467
dot1l
Histone-lysine N-methyltransferase, H3 lysine-79 specific.
    
 
 0.416
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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