Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159040Homeobox A2b. (323 aa)    
Predicted Functional Partners:
H2MT59_ORYLA
Homeobox D4a.
   
  
 0.719
ENSORLP00000033948
Homeobox A5a.
  
 
0.633
hoxb5
Homeobox B5b.
  
 
0.620
LOC101170024
Homeobox B4a.
   
 
 0.578
LOC101169786
HoxB5a.
   
 
 0.539
egr2
Early growth response 2b.
    
 0.451
LOC100301594
Homeobox A4a.
  
  
0.450
LOC100049394
TLE family member 3, transcriptional corepressor.
    
 
 0.435
rchy1
Ring finger and CHY zinc finger domain containing 1.
    
 
 0.428
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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