close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159040Homeobox A2b. (323 aa)    
Predicted Functional Partners:
H2MT59_ORYLA
Homeobox D4a.
   
  
 0.670
hoxb5
Homeobox B5b.
  
 
0.500
ENSORLP00000033948
Homeobox A5a.
  
 
0.464
egr2
Early growth response 2b.
    
 0.459
LOC100049394
TLE family member 3, transcriptional corepressor.
    
 
 0.441
LOC101171064
Growth differentiation factor 6a.
   
  
 0.439
LOC101169786
HoxB5a.
  
 
0.434
LOC100301594
Homeobox A4a.
  
  
0.428
pbx1
Homeobox domain-containing protein.
    
 0.421
LOC101160104
Pre-B-cell leukemia homeobox 1b.
    
 0.421
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.