Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HID1HID1 domain containing. (800 aa)    
Predicted Functional Partners:
gle1
Uncharacterized protein.
   
 
 0.753
nup155
Nucleoporin 155.
    
 
 0.715
nup214
Nup214_FG domain-containing protein.
    
 
 0.710
nup133
Nucleoporin 133.
   
 
 0.706
NUP54
Nucleoporin 54.
   
 
 0.705
usp40
Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family.
    
 
 0.696
usp7
Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.
    
 
 0.696
rae1
Ribonucleic acid export 1.
    
 
 0.665
nxf1
Zgc:153681.
    
 
 0.656
mcm3ap
Minichromosome maintenance complex component 3 associated protein.
    
   0.597
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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