STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf26Ring finger protein 26. (447 aa)    
Predicted Functional Partners:
rps25
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
      
 0.867
slc37a4
Solute carrier family 37 member 4a.
      
 0.856
slc29a1
Solute carrier family 29 member 1a.
      
 0.608
tmem33
Transmembrane protein 33.
    
 
 0.542
LOC101164931
Uncharacterized protein.
    
 
 0.494
foxn4
Forkhead box N4.
    
 
 0.463
LOC101162521
Ubiquitin-like modifier activating enzyme 3.
     
 0.459
UBA3
Ubiquitin like modifier activating enzyme 3.
     
 0.459
TMEM43
Uncharacterized protein.
    
 
 0.437
zdhhc1
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.404
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.