Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnf26Ring finger protein 26. (447 aa)    
Predicted Functional Partners:
rps25
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
      
 0.900
slc37a4
Solute carrier family 37 member 4a.
      
 0.881
TMEM43
Uncharacterized protein.
    
 
 0.807
tax1bp1
Tax1 (human T-cell leukemia virus type I) binding protein 1b.
    
 
 0.723
slc29a1
Solute carrier family 29 member 1a.
      
 0.707
sqstm1
Sequestosome 1.
   
 
 0.699
sting1
Transmembrane protein 173.
    
 
 0.693
tmem33
Transmembrane protein 33.
    
 
 0.659
rnf115
Ring finger protein 115.
     
 0.640
LOC100301626
Fork-head domain-containing protein.
    
 
 0.626
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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