STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162715H1 histone family, member 0. (196 aa)    
Predicted Functional Partners:
dffb
DNA fragmentation factor, beta polypeptide (caspase-activated DNase).
    
 0.748
cdk6
Cyclin-dependent kinase 6; Belongs to the protein kinase superfamily.
   
 0.718
cdk1
Cyclin-dependent kinase 1; Plays a key role in the control of the eukaryotic cell cycle. It is required in higher cells for entry into S-phase and mitosis. Component of the kinase complex that phosphorylates the repetitive C- terminus of RNA polymerase II. Catalytic component of MPF (By similarity); Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily.
   
 0.718
cdk2
Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.
   
 0.718
cdk4
Cyclin-dependent kinase 4; Belongs to the protein kinase superfamily.
   
 0.718
LOC101172846
Histone H2A; Belongs to the histone H2A family.
   
 
 0.687
LOC101170644
H2A histone family, member Va; Belongs to the histone H2A family.
   
 
 0.687
pop1
POP1 homolog, ribonuclease P/MRP subunit.
    
   0.655
LOC101169811
CCHC-type domain-containing protein.
    
 
 0.655
LOC101165167
High mobility group box 1a.
   
 0.647
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.