STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
klhl18Kelch-like family member 18. (686 aa)    
Predicted Functional Partners:
nfe2l2
Nuclear factor, erythroid 2-like 2a.
    
 0.878
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.857
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.857
sqstm1
Sequestosome 1.
    
 0.851
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.698
LOC101157007
Prothymosin alpha b.
    
 
 0.698
dpp3
Dipeptidyl peptidase 3; Belongs to the peptidase M49 family.
   
 0.695
NFE2L1
Nuclear factor, erythroid 2 like 1.
    
 0.689
pgam5
PGAM family member 5, serine/threonine protein phosphatase, mitochondrial.
    
 
 0.683
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
   
 0.662
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.