Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155765C2 calcium dependent domain containing 4A. (449 aa)    
Predicted Functional Partners:
LOC105355947
Shisa family member 7a.
      
 0.856
RIMS2
Regulating synaptic membrane exocytosis 2.
     
 0.616
adamts13
ADAM metallopeptidase with thrombospondin type 1 motif, 13.
    
   0.615
LOC101162655
BCL2 interacting protein like.
      
 0.600
ctu2
Cytoplasmic tRNA 2-thiolation protein 2; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with CTU1/ATPBD3 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
      
 0.584
H2L8K4_ORYLA
Regulating synaptic membrane exocytosis 1a.
     
 0.525
LOC101174515
Regulating synaptic membrane exocytosis 3.
     
 0.525
ENSORLP00000031636
C2 domain-containing protein.
     
 0.525
dcp1b
Decapping mRNA 1B.
      
 0.513
ENSORLP00000026521
Uncharacterized protein.
     
 0.497
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.