Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101159767Beta-carotene oxygenase 2a. (556 aa)    
Predicted Functional Partners:
stard3
StAR-related lipid transfer (START) domain containing 3.
      
 0.560
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.539
LOC101171360
Perilipin 6.
      
 0.501
LOC101168619
Patatin-like phospholipase domain containing 2.
      
 0.499
faxdc2
Fatty acid hydroxylase domain containing 2; Belongs to the sterol desaturase family.
      
 0.498
spr
Sepiapterin reductase b.
      
 0.498
scarb1
Scavenger receptor class B, member 1; Belongs to the CD36 family.
   
  
 0.493
dct
Dopachrome tautomerase.
     
 0.476
LOC101155960
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.468
KIF5B
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.468
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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