Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MARCHF6Membrane associated ring-CH-type finger 6. (898 aa)    
Predicted Functional Partners:
sqle
Squalene epoxidase a.
    
 
 0.931
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.911
LOC101168653
RING-CH-type domain-containing protein.
  
  
 
0.900
ube2j2
Ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast).
    
 
 0.822
amfr
Autocrine motility factor receptor b.
    
 
 0.764
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.764
c1qtnf12
C1q and TNF related 12.
    
 
 0.752
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.745
spata5l1
Spermatogenesis associated 5-like 1.
   
 
 0.739
LOC101162525
CCR4-NOT transcription complex, subunit 2.
    
 
 0.713
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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