Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101172334BAH domain and coiled-coil containing 1a. (2786 aa)    
Predicted Functional Partners:
LOC101172976
SIN3-HDAC complex associated factor.
    
   0.872
sap30l
Sap30-like.
    
   0.724
ctu1
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
   
   0.682
LOC110017569
SIN3-HDAC complex associated factor, like.
    
   0.677
ing1
Inhibitor of growth protein.
    
 
 0.626
rbbp4
Retinoblastoma binding protein 4.
    
 
 0.616
LOC101156710
Retinoblastoma binding protein 4, like.
    
 
 0.616
LOC101156729
Mesoderm induction early response 1, family member 2.
    
 
 0.501
mier1
Mesoderm induction early response 1b, transcriptional regulator.
    
 
 0.500
mier3
Mesoderm induction early response 1, family member 3 b.
    
 
 0.500
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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