Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bfsp2Beaded filament structural protein 2, phakinin; Belongs to the intermediate filament family. (423 aa)    
Predicted Functional Partners:
BFSP1
Beaded filament structural protein 1; Belongs to the intermediate filament family.
    
 
 0.921
Unc79
Uncharacterized protein.
   
 0.706
LOC101166967
Crystallin, beta B2; Belongs to the beta/gamma-crystallin family.
      
 0.689
CRYBB3
Crystallin beta B3; Belongs to the beta/gamma-crystallin family.
    
 0.684
fbln5
Fibulin 5.
   
 0.677
ccdc186
Si:ch211-225b10.4.
      
 0.661
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
      
 0.655
LOC101167707
Keratin 5; Belongs to the intermediate filament family.
   
 0.647
cryaa
Alpha-crystallin A chain; May contribute to the transparency and refractive index of the lens; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.639
LOC101171851
Crystallin, beta A1a; Belongs to the beta/gamma-crystallin family.
   
  
 0.625
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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