STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srsf10Serine and arginine rich splicing factor 10. (249 aa)    
Predicted Functional Partners:
LOC101162697
Serine and arginine rich splicing factor 1a.
   
 0.957
LOC101171767
Uncharacterized protein.
   
 0.957
ythdc1
YTH domain containing 1.
    
 
 0.824
LOC101155211
Serine and arginine rich splicing factor 7a.
   
0.814
SRSF3
Serine and arginine rich splicing factor 3b.
   
0.795
H2M705_ORYLA
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.772
LOC101164733
Serine and arginine rich splicing factor 9.
   
 0.764
H2N0H8_ORYLA
RRM domain-containing protein.
   
0.763
hexim1
HEXIM P-TEFb complex subunit 1.
    
 
 0.762
tra2a
RRM domain-containing protein.
   
0.752
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.