STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159942Chromobox homolog 3b. (193 aa)    
Predicted Functional Partners:
ehmt2
Euchromatic histone-lysine N-methyltransferase 2.
    
 0.570
suv39h1
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
    
 0.570
ENSORLP00000034118
ANK_REP_REGION domain-containing protein.
    
 0.570
LOC101172575
SET domain and mariner transposase fusion gene.
    
 0.570
ENSORLP00000038987
Uncharacterized protein.
    
 0.570
LOC101167635
Euchromatic histone-lysine N-methyltransferase 1b.
    
 0.570
rnf2
Ring finger protein 2.
    
 0.554
RING1
Ring finger protein 1.
    
 0.554
emsy
EMSY transcriptional repressor, BRCA2 interacting.
    
 
 0.535
chaf1a
Chromatin assembly factor 1, subunit A (p150).
   
 
 0.534
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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