STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c19h7orf50Uncharacterized protein. (241 aa)    
Predicted Functional Partners:
mak16
Protein MAK16 homolog; Belongs to the MAK16 family.
   
  
 0.727
dkc1
Dyskeratosis congenita 1, dyskerin.
   
   0.688
dnttip2
Deoxynucleotidyltransferase, terminal, interacting protein 2.
   
  
 0.685
alg9
Ferredoxin-fold anticodon binding domain containing 1.
   
  
 0.620
surf6
Surfeit 6.
   
   0.600
nexn
Ig-like domain-containing protein.
   
   0.599
tma16
Translation machinery associated 16 homolog.
   
  
 0.598
pum3
Pumilio RNA-binding family member 3.
   
  
 0.596
ebna1bp2
EBNA1 binding protein 2.
   
    0.594
nop53
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
   
    0.570
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.