Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ubash3bUbiquitin associated and SH3 domain containing Ba. (642 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
   0.834
PLA2G12B
Phospholipase A2 group XIIB.
      
 0.738
wrnip1
WRN helicase interacting protein 1.
   
 
 0.730
ubc
Ubiquitin B.
   
   0.716
tab1
TGF-beta activated kinase 1/MAP3K7 binding protein 1.
   
   0.703
grb2
Growth factor receptor-bound protein 2b.
   
 
 0.703
LOC101172593
Tumor necrosis factor a (TNF superfamily, member 2).
    
   0.701
cbl
Cbl proto-oncogene, E3 ubiquitin protein ligase.
   
 
 0.675
etfdh
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
   
  
 0.673
slc25a48
Solute carrier family 25 member 48; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.659
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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