Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LU76_ORYLASH3 domain containing 19. (765 aa)    
Predicted Functional Partners:
sh3yl1
SH3 and SYLF domain containing 1.
    
   0.874
ficd
FIC domain containing.
      
 0.625
vta1
Vesicle (multivesicular body) trafficking 1.
    
   0.596
LOC101169791
Clathrin interactor 1a.
     
 0.583
CLINT1
Clathrin interactor 1.
     
 0.583
pum1
Pumilio RNA-binding family member 1.
     
  0.572
pum2
Pumilio 2.
     
  0.572
cwc22
CWC22 spliceosome associated protein homolog.
     
 0.498
ctnna1
Catenin (cadherin-associated protein), alpha 1.
    
 0.480
vcl
Vinculin b.
    
 0.480
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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