STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LU76_ORYLASH3 domain containing 19. (765 aa)    
Predicted Functional Partners:
sh3yl1
SH3 and SYLF domain containing 1.
   
   0.623
vta1
Vesicle (multivesicular body) trafficking 1.
    
   0.594
LOC101169791
Clathrin interactor 1a.
     
 0.571
CLINT1
Clathrin interactor 1.
     
 0.571
LOC101161367
GTP cyclohydrolase 2.
    
   0.550
LOC101168423
GTP cyclohydrolase 1.
    
   0.550
gak
Cyclin G associated kinase.
     
 0.521
LOC101167081
NADPH oxidase organizer 1b.
   
 0.517
LOC101166531
SH3 and PX domains 2Aa.
   
 0.508
ncf4
Neutrophil cytosolic factor 4.
   
0.508
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.