STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ube4aUbiquitination factor E4A (UFD2 homolog, yeast). (1082 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 0.953
ubqln4
Ubiquilin 4.
   
 0.857
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.847
ubl7
Ubiquitin-like 7b (bone marrow stromal cell-derived).
   
 0.837
yod1
YOD1 deubiquitinase.
    
 
 0.819
ubc
Ubiquitin B.
    
 0.809
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.801
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
   
 0.801
spata5l1
Spermatogenesis associated 5-like 1.
  
 
 0.799
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
  
 
 0.799
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.