STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xxylt1Xyloside xylosyltransferase 1. (402 aa)    
Predicted Functional Partners:
poglut1
Protein O-glucosyltransferase 1.
      
 0.629
pofut1
Uncharacterized protein.
      
 0.538
svbp
Small vasohibin binding protein.
    
 0.536
eogt
EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase.
      
 0.489
LOC101160408
Family with sequence similarity 174 member B.
      
 0.463
LOC101157167
Receptor expression-enhancing protein.
   
  
 0.450
LOC101154762
Coagulation factor VII, like.
    
   0.400
LOC101155013
Coagulation factor VII.
    
   0.400
LOC101156578
Protein Z, vitamin K-dependent plasma glycoprotein a; Belongs to the peptidase S1 family.
    
   0.400
LOC111948660
Coagulation factor IXb.
    
   0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.