Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fmnl3Formin-like 3. (989 aa)    
Predicted Functional Partners:
nphp4
Uncharacterized protein.
    
 0.780
CDC42
Cell division cycle 42.
   
 0.653
LOC101164400
Uncharacterized protein.
   
 0.653
LOC101166499
Profilin; Belongs to the profilin family.
    
 0.598
flcn
Folliculin.
    
 
 0.555
LOC101161232
Profilin; Belongs to the profilin family.
    
 0.521
LOC101164658
Uncharacterized protein.
   
 0.493
LOC101174454
Uncharacterized protein.
   
 0.493
LOC101155194
Uncharacterized protein.
    
 0.462
RHOB
Ras homolog family member B.
    
 0.462
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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