STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167721Uncharacterized protein. (342 aa)    
Predicted Functional Partners:
ddx1
DEAD (Asp-Glu-Ala-Asp) box helicase 1.
   
 
 0.831
rtraf
RNA transcription, translation and transport factor.
    
 
 0.792
rtcb
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
    
 0.696
c21h2orf49
Si:dkeyp-118h3.6.
     
 0.584
fam98b
Family with sequence similarity 98 member B.
  
  
 
0.577
fam98a
Uncharacterized protein.
  
  
 
0.577
zbtb8os
Zinc finger and BTB domain containing 8 opposite strand.
     
  0.540
Nufip2
Nuclear FMR1 interacting protein 2.
    
 
 0.500
hypk
Huntingtin interacting protein K.
      
 0.416
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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