Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167721Uncharacterized protein. (342 aa)    
Predicted Functional Partners:
rtcb
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
    
 0.977
rtraf
RNA transcription, translation and transport factor.
    
 0.976
fam98b
Family with sequence similarity 98 member B.
  
 
 
0.910
fam98a
Uncharacterized protein.
  
  
 
0.908
c21h2orf49
Si:dkeyp-118h3.6.
     
 0.907
zbtb8os
Zinc finger and BTB domain containing 8 opposite strand.
     
  0.900
ddx1
DEAD (Asp-Glu-Ala-Asp) box helicase 1.
   
 
 0.797
Nufip2
Nuclear FMR1 interacting protein 2.
    
 
 0.653
LOC101175201
LsmAD domain-containing protein.
    
 
 0.460
atxn2
Ataxin 2.
    
 
 0.460
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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