Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101171754LON peptidase N-terminal domain and ring finger 1. (585 aa)    
Predicted Functional Partners:
neil1
Nei-like DNA glycosylase 1.
      
 0.820
tp53bp1
Tumor protein p53 binding protein, 1.
    
 0.639
rps27a
Ribosomal protein S27a.
   
  0.619
ube2n
Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.558
ubc
Ubiquitin B.
    
 0.558
LOC101170318
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.558
LOC100049426
Zgc:66475.
     
 0.549
LOC101174986
Cryptochrome circadian regulator 5.
     
 0.549
brca1
Uncharacterized protein.
    
 0.522
bard1
BRCA1 associated RING domain 1.
    
 0.512
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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