STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rgp1GP1 homolog, RAB6A GEF complex partner 1. (386 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.994
vps52
VPS52 subunit of GARP complex.
     
 0.772
vps53
VPS53 subunit of GARP complex.
     
 0.767
cog8
Component of oligomeric golgi complex 8.
    
 0.763
vps54
VPS54 subunit of GARP complex.
     
 0.752
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.735
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.706
rab6b
Uncharacterized protein.
    
 0.704
RAB41
Uncharacterized protein.
    
 0.704
LOC101156359
RAB6B, member RAS oncogene family.
    
 0.704
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.