Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rgp1GP1 homolog, RAB6A GEF complex partner 1. (386 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.999
RAB41
Uncharacterized protein.
    
 0.861
rab6a
RAB6A, member RAS oncogene family.
    
 0.861
rab6b
Uncharacterized protein.
    
 0.852
LOC101156359
RAB6B, member RAS oncogene family.
    
 0.852
cog8
Component of oligomeric golgi complex 8.
    
 0.839
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.803
LOC101165168
RAB34, member RAS oncogene family b.
    
 0.777
rab34
RAB34, member RAS oncogene family a.
    
 0.777
arfrp1
ADP-ribosylation factor related protein 1.
    
  0.729
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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