acacb protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

acacb

Acetyl-CoA carboxylase beta. (2377 aa)

Predicted Functional Partners:

prkaa2

0.961

H2MEE3_ORYLA

0.952

mcat

0.948

LOC101160160

0.942

acat2

0.941

acat1

0.941

prkaa1

0.940

acss1

0.938

LOC101157758

0.938

LOC101172107

0.938

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2MEE3_ORYLA	acacb	ENSORLP00000016949	ENSORLP00000009716	Carrier domain-containing protein.	Acetyl-CoA carboxylase beta.	0.952
H2MEE3_ORYLA	mcat	ENSORLP00000016949	ENSORLP00000019562	Carrier domain-containing protein.	Malonyl CoA:ACP acyltransferase (mitochondrial).	0.948
LOC101157758	LOC101172107	ENSORLP00000025065	ENSORLP00000041269	Acyl-CoA synthetase short chain family member 2.	Acetyl-coenzyme A synthetase.	0.901
LOC101157758	acacb	ENSORLP00000025065	ENSORLP00000009716	Acyl-CoA synthetase short chain family member 2.	Acetyl-CoA carboxylase beta.	0.938
LOC101157758	acat1	ENSORLP00000025065	ENSORLP00000027902	Acyl-CoA synthetase short chain family member 2.	Acetyl-CoA acetyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.949
LOC101157758	acat2	ENSORLP00000025065	ENSORLP00000016574	Acyl-CoA synthetase short chain family member 2.	Acetyl-CoA acetyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.949
LOC101157758	acss1	ENSORLP00000025065	ENSORLP00000021862	Acyl-CoA synthetase short chain family member 2.	Acetyl-coenzyme A synthetase.	0.904
LOC101160160	acacb	ENSORLP00000012820	ENSORLP00000009716	Carnitine palmitoyltransferase 1B (muscle); Belongs to the carnitine/choline acetyltransferase family.	Acetyl-CoA carboxylase beta.	0.942
LOC101172107	LOC101157758	ENSORLP00000041269	ENSORLP00000025065	Acetyl-coenzyme A synthetase.	Acyl-CoA synthetase short chain family member 2.	0.901
LOC101172107	acacb	ENSORLP00000041269	ENSORLP00000009716	Acetyl-coenzyme A synthetase.	Acetyl-CoA carboxylase beta.	0.938
LOC101172107	acat1	ENSORLP00000041269	ENSORLP00000027902	Acetyl-coenzyme A synthetase.	Acetyl-CoA acetyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.949
LOC101172107	acat2	ENSORLP00000041269	ENSORLP00000016574	Acetyl-coenzyme A synthetase.	Acetyl-CoA acetyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.949
LOC101172107	acss1	ENSORLP00000041269	ENSORLP00000021862	Acetyl-coenzyme A synthetase.	Acetyl-coenzyme A synthetase.	0.903
acacb	H2MEE3_ORYLA	ENSORLP00000009716	ENSORLP00000016949	Acetyl-CoA carboxylase beta.	Carrier domain-containing protein.	0.952
acacb	LOC101157758	ENSORLP00000009716	ENSORLP00000025065	Acetyl-CoA carboxylase beta.	Acyl-CoA synthetase short chain family member 2.	0.938
acacb	LOC101160160	ENSORLP00000009716	ENSORLP00000012820	Acetyl-CoA carboxylase beta.	Carnitine palmitoyltransferase 1B (muscle); Belongs to the carnitine/choline acetyltransferase family.	0.942
acacb	LOC101172107	ENSORLP00000009716	ENSORLP00000041269	Acetyl-CoA carboxylase beta.	Acetyl-coenzyme A synthetase.	0.938
acacb	acat1	ENSORLP00000009716	ENSORLP00000027902	Acetyl-CoA carboxylase beta.	Acetyl-CoA acetyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.941
acacb	acat2	ENSORLP00000009716	ENSORLP00000016574	Acetyl-CoA carboxylase beta.	Acetyl-CoA acetyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.941
acacb	acss1	ENSORLP00000009716	ENSORLP00000021862	Acetyl-CoA carboxylase beta.	Acetyl-coenzyme A synthetase.	0.938