Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101164047Ankyrin repeat domain 13C. (526 aa)    
Predicted Functional Partners:
DLK1
Delta like non-canonical Notch ligand 1.
    
   0.619
CDH4
Cadherin 4; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.515
LOC101161393
Cadherin 4, type 1, R-cadherin (retinal); Cadherins are calcium-dependent cell adhesion proteins.
      
 0.515
cdh11
Cadherin 11, type 2, OB-cadherin (osteoblast); Cadherins are calcium-dependent cell adhesion proteins.
      
 0.513
adamts9
ADAM metallopeptidase with thrombospondin type 1 motif, 9.
      
 0.449
rpl34
Ribosomal protein L34.
      
 0.448
rpl14
Ribosomal protein L14.
      
 0.431
LOC101170539
Exportin 1 (CRM1 homolog, yeast) b.
      
 0.427
sec23ip
SEC23 interacting protein.
   
  
 0.402
ddhd2
DDHD domain containing 2.
   
  
 0.402
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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