STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gsdmeGasdermin Eb. (499 aa)    
Predicted Functional Partners:
casp7
Caspase 7, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
     
 0.624
casp2
Caspase 2, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
     
 0.611
LOC101174762
Uncharacterized protein; Belongs to the peptidase C14A family.
     
 0.590
casp3
Uncharacterized protein; Belongs to the peptidase C14A family.
     
 0.580
LOC101171965
Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
     
 0.511
LOC101165110
Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
     
 0.511
LOC101159115
Uncharacterized protein.
     
 0.481
LOC101156378
Uncharacterized protein; Belongs to the peptidase C14A family.
     
 0.462
LOC100049265
Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
     
 0.461
casp9
Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
     
 0.435
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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