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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LUH7_ORYLAUncharacterized protein. (730 aa)    
Predicted Functional Partners:
ENSORLP00000039203
Uncharacterized protein.
 
   
  0.909
ENSORLP00000032452
Uncharacterized protein.
 
   
  0.900
ENSORLP00000038482
Uncharacterized protein.
 
      0.900
ENSORLP00000037127
Uncharacterized protein.
 
   
 
0.795
agrn
Agrin.
    
 0.659
ENSORLP00000036554
Uncharacterized protein.
 
      0.611
LOC101172518
Dickkopf WNT signaling pathway inhibitor 1a.
    
 0.580
ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
    
 0.548
pcsk9
Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family.
    
 0.544
H2M6E4_ORYLA
Uncharacterized protein.
    
 0.520
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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