STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LUH7_ORYLAUncharacterized protein. (730 aa)    
Predicted Functional Partners:
gulp1
GULP PTB domain containing engulfment adaptor 1a.
    
 0.930
LOC101169696
PID domain-containing protein.
    
  0.920
ENSORLP00000039203
Uncharacterized protein.
 
  
  0.919
ENSORLP00000032452
Uncharacterized protein.
 
  
   0.917
LOC101160304
Calreticulin.
    
 0.913
LOC101162115
Calreticulin.
    
 0.913
LOC101169735
Calreticulin.
    
 0.913
LOC101157838
C1q domain-containing protein.
    
  0.904
LOC101168703
C1q domain-containing protein.
     
  0.901
H2ML08_ORYLA
Uncharacterized protein.
  
  
 
0.900
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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