Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tex261Testis expressed 261. (196 aa)    
Predicted Functional Partners:
H2M705_ORYLA
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
      
 0.527
tmed10
Transmembrane p24 trafficking protein 10.
      
 0.498
tpt1
Translationally-controlled tumor protein; Belongs to the TCTP family.
      
 0.476
cnih4
Cornichon family AMPA receptor auxiliary protein 4.
   
  
 0.446
cnih1
Cornichon family AMPA receptor auxiliary protein 1.
   
  
 0.446
LOC101163246
ERGIC and golgi 2.
   
 
 0.439
LOC101157024
Si:ch211-225b10.3.
   
 
 0.439
surf4
Surfeit 4.
   
  
 0.413
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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