Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
TPM1Uncharacterized protein; Belongs to the tropomyosin family. (326 aa)    
Predicted Functional Partners:
LOC101167500
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.805
tmod4
Tropomodulin 4 (muscle).
   
 0.730
MYL2
Myosin, light chain 2b, regulatory, cardiac, slow.
   
 0.685
LOC101156569
Troponin I type 1b (skeletal, slow).
   
 0.684
H2LWG8_ORYLA
Troponin I type 1a (skeletal, slow).
   
 0.684
MYL2-2
Myosin light chain 2.
   
 0.682
mylpf
Myosin light chain, phosphorylatable, fast skeletal muscle a.
   
 0.675
mybpc3
Myosin binding protein C, cardiac.
   
 0.673
LOC101155425
Troponin I type 2a (skeletal, fast), tandem duplicate 1.
   
 0.665
TNNI2
Troponin I2, fast skeletal type.
   
 0.665
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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