STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173307Transmembrane channel-like protein. (775 aa)    
Predicted Functional Partners:
LOC101162873
Leucine rich repeat containing 18b.
    
 0.668
rasd1
Uncharacterized protein.
    
 0.664
ADAP1
ArfGAP with dual PH domains 1.
    
 
 0.656
myadml2
Myeloid-associated differentiation marker-like 2.
      
 0.653
MYADML2
Myeloid associated differentiation marker like 2.
      
 0.653
vstm4
V-set and transmembrane domain containing 4b.
      
 0.651
LOC101158978
Mitogen-activated protein kinase.
    
 0.624
notum
Notum, palmitoleoyl-protein carboxylesterase a.
     
 0.600
abca3
ATP-binding cassette, sub-family A (ABC1), member 3b.
    
 
 0.592
cant1
Calcium activated nucleotidase 1a.
    
 0.542
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.