STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lactbLactamase, beta. (525 aa)    
Predicted Functional Partners:
ubxn2a
UBX domain protein 2A.
    
  0.908
nsfl1c
NSFL1 (p97) cofactor (p47).
    
  0.840
twf1
Twinfilin actin-binding protein 1a.
    
 0.612
fut4
Alpha3-fucosyltransferase.
      
 0.587
fut9a
Alpha3-fucosyltransferase.
      
 0.587
fut9c
Alpha3-fucosyltransferase.
      
 0.587
LOC101165330
Glia maturation factor; Belongs to the actin-binding proteins ADF family. GMF subfamily.
    
 0.571
fut7
Alpha3-fucosyltransferase.
      
 0.561
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
   
 
 0.504
fut7a
Fucosyltransferase 7 (alpha (1,3) fucosyltransferase).
      
 0.503
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.