Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lactbLactamase, beta. (525 aa)    
Predicted Functional Partners:
ubxn2a
UBX domain protein 2A.
    
  0.962
nsfl1c
NSFL1 (p97) cofactor (p47).
    
  0.895
nudcd1
NudC domain containing 1.
    
   0.786
anln
Anillin, actin binding protein.
    
  0.608
LOC101174346
Si:dkey-30c15.10.
    
  0.608
mrps23
Mitochondrial ribosomal protein S23.
      
 0.608
ints9
Integrator complex subunit 9.
    
 0.582
ppm1l
Protein phosphatase, Mg2+/Mn2+ dependent 1L.
   
 0.578
LOC101174949
Protein phosphatase, Mg2+/Mn2+ dependent, 1La.
   
 0.578
pisd
Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine.
      
 0.498
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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