STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFMBT1Scm like with four mbt domains 1. (866 aa)    
Predicted Functional Partners:
pfkfb1
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1.
     
 0.821
rnf2
Ring finger protein 2.
    
 0.605
RING1
Ring finger protein 1.
    
 0.605
kfh-r
Red-sensitive opsin; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
     
 0.588
YAF2
RanBP2-type domain-containing protein.
    
 0.579
LOC101157658
YY1 associated factor 2.
    
 0.579
rybp
RING1 and YY1 binding protein b.
    
 0.579
pcgf5
Polycomb group ring finger 5a.
   
 0.543
eed
Embryonic ectoderm development protein.
   
 0.541
PCGF3
Polycomb group ring finger 3.
   
 0.538
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.