Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100820721Si:dkey-21c19.3. (709 aa)    
Predicted Functional Partners:
sumo1
Small ubiquitin-related modifier.
   
 0.957
sumo2
Small ubiquitin-related modifier.
   
 0.883
sumo2-2
Small ubiquitin-related modifier.
   
 0.883
sumo4
Small ubiquitin-related modifier.
   
 0.883
nup133
Nucleoporin 133.
   
 
 0.824
LOC101170552
ULP_PROTEASE domain-containing protein.
   
 0.819
LOC101175292
SUMO specific peptidase 7b.
   
 0.819
H2MSB4_ORYLA
SUMO specific peptidase 6a.
   
 0.813
kpnb1
Karyopherin (importin) beta 1.
   
 
 0.785
LOC101160693
Ran GTPase activating protein 1b.
    
 
 0.769
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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