Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem192Transmembrane protein 192. (263 aa)    
Predicted Functional Partners:
lamp1
Lysosomal associated membrane protein 1a.
    
 0.876
lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
   
 0.833
spryd4
SPRY domain containing 4.
   
  0.745
H2MBF1_ORYLA
Lysosomal associated membrane protein 1b.
    
 0.745
rab7a
Uncharacterized protein.
    
 0.699
LOC101157689
RAB7a, member RAS oncogene family.
    
 0.699
rtraf
RNA transcription, translation and transport factor.
      
 0.690
tmem144
Transmembrane protein 144b.
      
 0.679
asb8
Ankyrin repeat and SOCS box containing 8.
    
 0.648
LOC101158573
V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.
    
 
 0.638
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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