Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157960Unc-5 netrin receptor C. (937 aa)    
Predicted Functional Partners:
LOC101155107
Uncharacterized protein.
    
 0.882
NTN4
Netrin 4.
    
 0.882
LOC101175418
Si:dkey-112m2.1.
      
 0.817
tmem132c
Transmembrane protein 132C.
      
 0.817
LOC101160243
Uncharacterized protein.
      
 0.816
LOC101160359
Netrin 2.
    
 0.814
LOC101164509
Netrin 5.
    
 0.785
LOC101161061
Netrin 1b.
    
 0.785
NTN1
Netrin 1.
    
 0.785
dcc
DCC netrin 1 receptor.
    
 0.777
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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